• Breakdancer Max Kahan Error

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    Breakdancer Installation/Running Problems: Error/Suspicious … – This is a followup to an earlier question I had about an error I as getting while running breakdancer: Error running breakdancer-max: Max Kahan error: 0. I decided to try re-installing the program and watch carefully for errors or suspicious messages.

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    Hello, Sometines when I run breakdancer I get this error, should I be worry about that? Max Kahan error: 0 Best Regards On 20 February 2013 18:20, Ken Chen wrote: > Your library must have a small insert size and large standard deviation. > > On Feb 20, 2013, at 11:02 AM, Grigoryev …

    This also worked generating outputs with last mag as Kahan error (which i ignored as read on other blogs https: … Command: breakdancer-max -o chrX -q 10 -d Fastq_SVReadsFile_X -g GBrowse_OUTFile_X.bed -l -h sample1_2_sample3_4.cfg Library Statistics:

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    This also worked generating outputs with last mag as Kahan error (which i ignored as read on other blogsC: Breakdancer Max Kahan Error:0) The problem is that the output file chrX_SV_allSample.ctx only contains SV specific to sample4. while all other samples contains NA in their columns.

    This page was last updated on Wednesday, 22-Jan-2014 16:11:25 CST. Installation notes for BreakDancer version 1.4.1-unstable-46-176af3e-dirty (commit 176af3e-dirty)

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    breakdancer_error. By: a guest on Nov 15th, 2013 | syntax: None | size: 20.70 KB | views: 38 | expires: Never. download | raw | embed | report abuse | print. Text below is selected. … .Max Kahan error: 0 …

    BreakDancer-1.1, released under GPLv3, is a Perl/Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads.

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    SEQ Answers. SEQanswers is a … This also worked generating outputs with last mag as Kahan error (which i ignored as read on other blogs https: … Command: breakdancer-max -o chrX -q 10 -d Fastq_SVReadsFile_X -g GBrowse_OUTFile_X.bed -l -h sample1_2_sample3_4.cfg

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